parse_tree

---

bigsmiles.methods.display_methods.tree_to_string.tree_to_string(bigsmiles_, show_object_labels=True, print_repr=False)

Creates a string representation of a tree for printing.

PARAMETER	DESCRIPTION
bigsmiles_	Root node TYPE: BigSMILES
show_object_labels	show object labels TYPE: bool DEFAULT: True
print_repr	print str or print repr of objects True: repr() is called False: str() is called TYPE: bool DEFAULT: False

RETURNS	DESCRIPTION
text	String with the structure of a tree. TYPE: str

Example

Code:

import bigsmiles
import bigsmiles.methods as bs_methods

polymer_string = "CC{[>][<]CC(C)[>][<]}CC(C)=C"
polymer = bigsmiles.BigSMILES(polymer_string)
text = bs_methods.print_tree(polymer)
print(text)

Output:

BigSMILES: CC{[>][<]CC(C)[>][<]}CC(C)=C
├── Atom: C
├── Bond: 
├── Atom: C
├── Bond: 
├── StochasticObject: {[>][<]CC(C)[>][<]}
│    └── StochasticFragment: [<]CC(C)[>]
│        ├── BondDescriptorAtom: [<]
│        ├── Bond: 
│        ├── Atom: C
│        ├── Bond: 
│        ├── Atom: C
│        ├── Branch: (C)
│        │    ├── Bond: 
│        │    └── Atom: C
│        ├── Bond: 
│        └── BondDescriptorAtom: [>]
├── Bond: 
├── Atom: C
├── Bond: 
├── Atom: C
├── Branch: (C)
│    ├── Bond: 
│    └── Atom: C
├── Bond: =
└── Atom: C

Configuration

bigsmiles.methods.display_methods.tree_to_string.TreeConfig

this class can be used to configure the tree parsing output

PARAMETER	DESCRIPTION
tree_symbol_options	symbols to build the tree. various ascii options are available
symbols	select from 'tree_symbol_options' what ascii symbols you want to use

Notes

• color can be added to the output with through the main configuration class